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PepSite A method to predict the location of peptide binding sites on protein surfaces: if you have a protein structure and a known or putative peptide that binds to it, pepsite is for you. From Petsalaki et al, PLoS Comp Biol, 2009. |
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3D Repertoire A European Commission 6th Framework Integrated Project Our group maintains most of the informatics related to this project. |
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Yeast complexes web site data derived from TAP/MS purifications From Gavin, Aloy et al Nature, 440, 631, 2006 |
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Linear Motif Discovery From Neduva et al PLoS Biology, 3, e405, 2005 |
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3D-ID: Interacting domains in three-dimensions From Stein et al Nucl. Acids Res, 33, D413-4178, 2005 |
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3SOM: 3D Surface Overlap Maximization From Ceulemans & Russell J. Mol. Biol., 338, 783-793, 2004 |
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Drosophila MicroRNA target predictions From Stark et al PLoS Biology, 1, 397-409, 2003 |
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DisEMBL: Intrinsic Protein Disorder Prediction From Linding et al, Structure, 11, 1453-1459, 2004 |
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PINTS: Patterns In Non-homologous Tertiary Structures Based on Stark et al, J. Mol. Biol., 326, 1307-1316, 2003. |
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Interaction Prediction through Tertiary Structure Based on Aloy & Russell, Proc Natl Acad Sci USA, 99 : 5896-5901, 2002. |
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Prediction Of Unknown Sub-types (PROUST) II Based on Hannenhalli & Russell, JMB, 303, 61-76, 2000. |
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Coiled-coil prediction Based on Lupas et al, Science, 252, 1162-1164, 1991. |
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Properties of the amino acids See also Betts & Russell, Amino acid properties and consequences of subsitutions, In Bioinformatics for Geneticists, M.Barnes & Ian Gray eds, Wiley, 2002. |
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Rob's old Guide to Structure Prediction (from ICRF, ca 1996) |
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